I can tell you from experience that it will indeed peel. You need to do each coat before the last fully cures, while its still a little "tacky". Also, why they would tell you not to fiberglass the inside blows my mind. It's all about strength and rigidity with epoxy, any kind of flexing will cause microfractures in epoxy leading to cracks and leaking over time. With your build you are going to have flexing so I would fiberglass the entire inside and I'd do 2 layers on the seams.
I'm wondering if they were referring to fiberglass and overall strength. I have seen other references to fiberglassing the outside of a joint or board providing more strength than on the inside. In either case you'd need to epoxy the interior for waterproofing and it is my suspicion that a fiberglass layer or two would be the most reliable way of avoiding micro-cracks allowing water to get to the wood.