hello; I have included a link to back up my statements to a degree. Down in the text you will find some comments about how the beneficial bacteria (bb) tend to stick to surfaces.
http://www.americanaquariumproducts.com/nitrogen_cycle.html
I have been cleaning reusable parts of filter media for decades with a garden hose. I also from time to time rinse out the body of my filters. I do not use anything but light water pressure.
My current thinking is from over 50 years of fishkeeping combined with reading fish forums the last six years or so. The basic concept is that the bb are on multiple surfaces in an established tank, not only in the filter media. My take is that pretty much any surface can have colonies with those surfaces in water flow likely having more colonies. This should mean that there are plenty of colonies around a tank with perhaps a greater concentration in the filter parts. To me this means I can remove filter media and toss it or rinse it out if it is still serviceable.
I do now try to do the cleaning in stages. I generally have at least two types of filters running, a mechanical power filter of some sort along with a bubble operated device. I do not clean both at the same time, so leaving the other in place and not disturbed. I also have some filters with more than one place for media. I will clean or replace only one part of the media at a time.
To me the main function of a mechanical filter is to trap detritus so I replace or clean the media as needed. I find other ways to have surfaces for the biological functions of the bb colonies.
The concept of only gently rinsing filter stuff in tank water was new to me six years ago when I got an decent internet connection. I thought about it for a time, did some extra reading and thought about my personal experience. I tried it both ways for a couple of years and have gone back to rinsing with a garden hose. To those who find this practice wrong, please run your tanks any way you wish.
Had I been new to the hobby six years ago the variety of practices found on these forums would have been hard to wade thru. I had over 40 years of experience (good and bad) to call on. I had a pretty good idea about what worked and what what does not.
If I had a filter setup such as you describe, I would likely clean or replace the media fairly often. In sections as suggested by another member. The notion of allowing a filter to clog up for fear of losing some bb does not seem so critical. There are bb on other surfaces and once established they do reproduce fairly quickly.
Good luck