I've had this happen many times, especially fry. They end up in overflows, sumps, protein skimmers, and even free standing fluidized bed filters.
I found putting screen, egg crate, or mesh around the over flow open areas and weirs help, but then the screens (etc) must be checked daily to help prevent blockages that could start a tank overflow. If your overflows are PVC, there are screen caps that are threaded and work nicely.