Are the rocks black? I had the kind of rocks that flaked off or chipped off to an extent, and they were grey. So i think with the fish moving and the filters on the sand just rubbed small pieces of it off of the rock making it looked like it mysteriously turned the sand grey even though I believe it was just rock "dustings". It's nothing major, new rocks(different kind) would help, I just swished the sand around after each WC and didn't even worried about it.