Fortunately, for most of us, our water supply and sewage systems are two different entities. While the treated water at waste water treatment facilities is supposed to be potable quality, it is not put back in the municipal water system. (Even if it was, it would be safe.) What I gather from the article is that with the spike, there are a lot more cases of asymptomatic COVID-19 than cases being diagnosed. Asymptomatic people can still spread the virus to weak vulnerable people who could develop severe symptoms, hence the precautions are mentioned.