Howdy,
If you hook the tanks up in a row, all the dirt from the first tank will flow into the second tank and all goes into the third before it reaches the filter. That's not practical. However, you could split the inlet and outlet and have the filter draw water from all tanks and return water into all tanks. Still, you'd need water bridges between the tanks to prevent accidental overflow if the hoses on one side are clogged a bit more.
However, I strongly suggest to use three smaller canisters rather than one big filter:
1) if one small filter breaks, you still have two tanks running to house your fish
2) If the big filter breaks, all tanks are screwed.
HarleyK
ps
choose Eheim