If you are using an fx6, just drop it right in the main tank. 2 reasons,
1 is the fx6 runs off of a partial syphon function so unless your sump is deeper than the height of the canister you may have issues getting it going. I experienced this with my 300g pond that sits on the floor, I need to have it fairly full to operate the fx6
2, the fx will polish your water in the tank, I keep an fx on all my set ups in addition to the sumps. As long as the fx6 is cleaned regularly itkeeps the water fairly pristine.