Sounds like a classic case of columnaris...
www.cib.espol.edu.ec/Digipath/D_Papers/35450.pdf
There's an antibiotic susceptibility table on page 40. The easiest to find for fish is erythromycin which can be found in Maracyn I. Like most antibiotics, it will knock out your biological filter. Kanamycin is good too at 1.2 g/gal and is readily taken up from a bath by fishes' gills. Tetracycline can be problematic depending on pH, etc.
Can you tell me some more details about this? I read it and got confused instead.