Taking all fry away from a pair of (any) cichlid, often causes the male to kill the female (or vice versa). If removing fry, I find it is best to leave a small group (maybe 10) with the pair, which may prevent aggression. And I often find those 10 grow faster, and stronger than the removed fry, especially if the main tank has lots of algae, and learned to allow fry tanks to become overgrown with algae, this allows constant grazing between feedings, and the algae, helps remove nutrients like nitrate. And especially for omnivores like JDs, algae is a major part of the diet
I also like to feed with a pipette or turkey baster, to get as much food into the shoal of fry where it is easily found, and mix newly hatched artemia with pureed food to help the new fry associate live with non-live food.
If your male doesn't kill the female in the interum, they may often spawn again in 10 days to a few weeks.
When eggs are about to hatch to wrigglers,I start artemia hatching stations, one, then another a couple days later so when one becomes exhausted, another becomes ready.
And as stated above, you may also want a couple fry rearing tanks, where you separate the obvious EB fry from the more normal ones, given the opportunity, the normal fry will often take out the less robust EB fry.