I have often used shiners and cutlips from bait shops with no problems, it is safer to go through the salt and quarantine routine first. I have also used wild caugt chub, sunnies, killies, and gambusia. I try to keep them for 2 weeks in water containing 2 teaspoons salt per gallon before using them. I have occasionally had to dose them with Paraguard as well.
Filthy Sanchez, it sounds like the pacus left enough shredded fish in the water to cause a bacterial bloom.