We use skimmers in freshwater where I work (sturgeon farm) to help mitigate waste. The water isn't agitated much more than in a saltwater skimmer (simple venturi style), but we "skim wet", which means that we are essentially dumping small amounts of water out with the skimmate at all times. Unfortunately this system only works if you have new water constantly entering the system. But the upside to this method is that the viscosity of the skimmate is so low that it just flows down a drain and the fractionator itself never needs to be cleaned.
