It does help to prevent cross breeding, which I deplore.
But I also find that in nature, (except for Thorichthys and a scant few others) one hardly ever finds 2 of one genus sharing the same place. I believe this has to do with competition, when a species such as Parachromis friedrichsthalii thrives in a certain area,it means it is uniquely fitted to that area, and has driven any other close competition for similar resources out. It may be that it has evolved for the topography, temp, prey, and predators, and in nature it is always survival of the fittest, unless man gets in the way.
You may say, what has an aquarium to do with nature, none of these things need to apply, but my opinion is, all the survival skills and competition problems are magnified by the lack of area provided in even the largest aquariums. So going against nature actually compounds problems such as aggression.