The bacteria that consume ammonia and nitrite are aerobic, that is they need oxygen. The bacteria that consume nitrate are anaerobic, that is they live in areas with little or no oxygen. Examples would be in the deepest inner area of large pieces of live rock or in sand beds that are deeper than 4" with 6" usually considered the minimum. There are those who set up 5 gallon buckets filled with sand and let water flow over the top of it. It's called a 'Remote Deep Sand Bed', Look it up. Nitrates can also be controlled by vodka and sugar dosing. But, that's a whole other story.
Sorry OP it seems TheCanuck and I have hijacked your thread. I hope some of the information has been helpful to you though.