Well, I re-did the trim and stained it. It's still drying, but I'm starting to think that painting it is the way to go.
I figured that the stain would kind of blend all the wood together, but it actually accentuated the differences in the wood. The left side is like a dark reddish color, the front is like pale and yellow, and the right is another color all it's own. And if that's not bad enough, the wood putty I bought doesn't match either.
When it dries I'll post pics and see what you guys think I should do. Keep the stain or slap on some paint.