More bio filtration is needed. Seems like your tank was relying on the substrate to house bacteria which is never a good idea like you have now experienced. In your fluval 405 I would suggest removing charcoal etc and leave only your mechanical sponge filtration and fill the rest with seachem matrix. To temporary detoxify the tank while cycling try using some seachem prime.
Clear water will come in time once cycling has finished and your tank parameters have stabilized.
Clear water will come in time once cycling has finished and your tank parameters have stabilized.