Looks to me that the tank is cycled. Although its tough to tell with the ammonia. I cant tell if its 0 or .25. Your doing water changes, so that will keep the nitrates down as well. As long as the ammonia and nitrites are 0 and your getting nitrates to rise, your cycled. Keep an eye on the parameters for the next few days.
The brown water is probably tannis, leeching from the driftwood. Its normal.
The brown water is probably tannis, leeching from the driftwood. Its normal.