I was going to say that I find both the stress and the substrate color feasible hypotheses but per your sister thread regarding an IDS with the same manifestation, it sounds like Duane's is correct because you say the IDS feeds and behaves normally. Otherwise, I'd start out by testing the water for ammonia, nitrite, nitrate, pH, temp, and hardness.
BTW, adapting to the unnatural environment color is also a kind of stress response. Long term, it can take its toll in the fish health, just like any form of a long-term low-stress situation, which eventually leads to illnesses and/or premature death.