Than whats the difference.... if you cant see it than who cares.
The difference is that two "Blue Gene" JD are capable of producing Blue-colored fry, they carry the Blue gene even if they look like a regular JD. Regular Jack Dempsey that don't carry the recessive Blue Gene won't be able to produce Blue-colored fry even if mated with a Blue Jack Dempsey. It's really simple. You would have to mate a Male Regular JD with a female EBJD, and then mate one of the male fry with his mom in order to get EBJD fry.
The inbreeding resulting from that is the reason why the majority of EBJD develop some type of deformity and are genetically weaker than their regular counterparts.