And they are inside the overflow towers exactly like you said. Would the hose barn plugs be more durable than bulkhead plugs?
I'd connect the bulkheads to your FX6, waste of perfectly good overflows and bulkheads otherwise. Gives you a way to keep your gear out of the tank, tidy everything up, easier priming if needed(Not really an issue with the FX6, but with other cannsters it can be.)