My rays liked to use it as an elevator to raise them to the surface quickly, then they soar down the glass or suction cup to it. If your still running air I wouldn't be concerned in the slightest, if they are riding the current chances are surface agitation is fine. I keep my sponge filters in my sump without air running to them and I'm curious if they would be effective as an instant start up, I'm not sure that they maintain a similar bacteria colony when unpowered.
This is something I've often wondered too, I'm guessing that if you have an air powered sponge; which you then uncouple and throw say in a sump, I'd imagine it to still have a bacterial colony of some extent, but not as much as it was when powered. Maybe just mostly on the outside, rather than all through it.
But that's just conjecture, not based on any evidence whatsoever