If your smaller pond was downhill a little from the main one,you could work out some sort of gravity feed like an overflow into a collector to a PVC pipe into the smaller pond.Then just pump the water back up to the main pond at flow rates that match each other,so it stays level,just like a tank sump.Definatley jam it with hardy,fast growing plants like guppy suggested for all the filtration you can squeeze out of that space........
Good Luck.