The venturi valve in your protein skimmer will tend to use energy enough to reduce flow by about 20% of the line feeding it.
And any centrifugal pump can be reduced using a ball valve on its outflow without compromising a pump.
So as some others have said, better to get the stronger pump, and if need be, throttle it back, than a smaller one.
On my freshwater tanks of around the same size (with protein skimmers) I use 2400 GPH pumps
(because freshwater fractionation takes a bit more agitation than salt water).