No, I wouldn't clean it right now, but I would try to figure out what's wrong with the biological filter. Like I said, it could be a simple as overfeeding. You don't clean the filter media with tap water, do you? Have the fish grown at all since you posted your "Tank Setup?" You've got a lot of fish in there -- what type of filtration are you running? How many times are you turning over the tank's volume per hour?
I think pH problems can be ruled out, at least.
I think pH problems can be ruled out, at least.