I believe one of the most misunderstood parts of aquarium filtration, and the propaganda about it, is that filters are supposed to pick up sh't and other stuff from the aquarium floor, and store it.Do you have something to stir up the water
on the bottom of the tank since your intake
is at the top of the tank?
Although this ability might make the tank make look cleaner, anything in left the "filter/sump", is still in the tank, metabolizing, and releasing invisable by-products like nitrate back into the tank (although slightly less toxic, they are probably more important to get rid of long term, than a few turds).
This is what aquarium vacuums and siphons are for, to remove these turds, and pollutants from the tank, before they get a chance to break down, and why it is necessary to regularly clean out mechanical media.
Beside that, the waters surface (the air water interface) is actually where some of the most deleterious by-products build up (think oil on a puddle), and skimming these almost invisible things out, and removing them by cleaning mechanical media is just as important. If...when you turn off pumps a while, and you see a white film starting to build up, that is what I mean.