Sorry to be difficult about it but could you grab some pics when you get a chance? Namely the intake (while running), and the biochamber bottom.
Most likely you're going to lose your CO2 at the first point of strong agitation, the intake. Any air that's being pulled down would be exactly that, common air.
If you really want to avoid drastic CO2 loss I'd suggest putting your CO2 reactor inline with your return, post pump. I know your current equipment probably won't satisfy this but one way to get around big CO2 loss is to inject your CO2 post oxygenation. The water will retain CO2 and O2 until it hits the tank if your return is air tight. Since you're running CO2 injection you want low-to-no surface agitation while CO2 is being added, so you'll have to make sure any return outlets or spray bars you have setup are below the surface.
If you do this, keep an eye out on your pH as regardless of the O2 level, the CO2 will make the water more acidic. You'll have to tailor the BPM to your system as 1-2 will be far too low and, if injecting after the pump, 30-40 may be too high.
I'll do what I can to help as I ran CO2 and Sump when I first started setting up planted tanks. You can make it work, but it will cost you 5x the cost of a non-sump tank on CO2.